miRBase entry: ami-mir-449b

Stem-loop ami-mir-449b

Accession

MI0029826

Description

Alligator mississippiensis ami-mir-449b precursor miRNA

Sequence

uagcgcucccugugucugguAGGCAGUGUACUGUUAGCUGGCUgcuuugugugaaucuagcagucgcuacugcacugucaacagcugcaggggcagcuca
.(((((.(((((((.(((...(((((((((..((.(((.(((((((..((....))..)))))))))))))))))))))..))).))))))))).)))..

Structure

-u   -  u       u   guA         CU  U   U       uu  g 
  agc gc cccugug cug   GGCAGUGUA  GU AGC GGCUgcu  gu u
  ||| || ||||||| |||   |||||||||  || ||| |||||||  ||  
  ucg cg gggacgu gac   cugucacgu  ca ucg cugacga  ua g
ac   a  -       c   -aa         --  -   -       uc  a

Annotation confidence Not enough data

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Genome context

AKHW03004724.1: 29165474-29165573 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ami-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-449b-5p

Accession	MIMAT0038282
Description	Alligator mississippiensis ami-miR-449b-5p mature miRNA
Sequence	21 - AGGCAGUGUACUGUUAGCUGGCU - 43
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196