miRBase entry: ami-mir-449c

Stem-loop ami-mir-449c

Accession

MI0029827

Description

Alligator mississippiensis ami-mir-449c precursor miRNA

Sequence

auguuucaguUUGGCAGUGCAUUGCUAGCUGGCuguuguguacguguguuaacaguugcuagcuguacuccauauuguugcauuc
((((..((((.(((.((((((..((((((.((((((((...........))))))))))))))))))))))).))))..))))..

Structure

--    uu    U   C      UU      U        ugua 
  augu  cagu UGG AGUGCA  GCUAGC GGCuguug    c
  ||||  |||| ||| ||||||  |||||| ||||||||    g
  uacg  guua acc ucaugu  cgaucg uugacaau    u
cu    uu    u   -      --      -        ugug

Annotation confidence Not enough data

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Genome context

AKHW03004724.1: 29165962-29166046 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ami-mir-449c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-449c-5p

Accession	MIMAT0038283
Description	Alligator mississippiensis ami-miR-449c-5p mature miRNA
Sequence	11 - UUGGCAGUGCAUUGCUAGCUGGC - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196