miRBase entry: ami-mir-449d

Stem-loop ami-mir-449d

Accession

MI0029828

Description

Alligator mississippiensis ami-mir-449d precursor miRNA

Sequence

augugugugugaugauuAGGCAGUGUAUUGUUAGUUAGCuggcauucacauaccagcaacuaaacacacuuccacauuagcacacaac
.(((((((.(((((....((.(((((....((((((.(((((..........)))))))))))..))))).)).))))))))))))..

Structure

-a       g     auuA  C     AUUG      A     cauu 
  ugugugu ugaug    GG AGUGU    UUAGUU GCugg    c
  ||||||| |||||    || |||||    |||||| |||||     
  acacacg auuac    cc ucaca    aaucaa cgacc    a
ca       -     ---a  u     --ca      -     auac

Annotation confidence Not enough data

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Genome context

AKHW03004724.1: 29164098-29164185 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ami-mir-449d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-449d-5p

Accession	MIMAT0038284
Description	Alligator mississippiensis ami-miR-449d-5p mature miRNA
Sequence	18 - AGGCAGUGUAUUGUUAGUUAGC - 39
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196