Stem-loop ami-mir-490

Accession

MI0029837

Description

Alligator mississippiensis ami-mir-490 precursor miRNA

Sequence

guucaugguucgacaCCAUGGAUCUCCAGGUGGGUCAagacuauagagauacacCAACCUGGAGGACUCCAUGCUGuugagcuguucaca
((..(((((((((((.(((((((((((((((.(((.....((....))....))).)))))))))..)))))).)))))))))))..)).

Structure

-  uc           C      --         G   CAaga  a 
 gu  augguucgaca CAUGGA  UCUCCAGGU GGU     cu u
 ||  ||||||||||| ||||||  ||||||||| |||     ||  
 ca  ugucgaguuGU GUACCU  GGAGGUCCA Cca     ga a
a  cu           C      CA         A   -caua  g 

Annotation confidence Not enough data

Genome context

AKHW03002956.1: 14945777-14945866 [-]

Mature ami-miR-490-5p

• Accession: MIMAT0038297
• Description: Alligator mississippiensis ami-miR-490-5p mature miRNA
• Sequence: 16 - CCAUGGAUCUCCAGGUGGGUCA - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-490-3p

• Accession: MIMAT0038298
• Description: Alligator mississippiensis ami-miR-490-3p mature miRNA
• Sequence: 55 - CAACCUGGAGGACUCCAUGCUG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196