Stem-loop ami-mir-1677b

Accession

MI0029853

Description

Alligator mississippiensis ami-mir-1677b precursor miRNA

Sequence

agcaacuaggggccugaUCCAGAGCCCGUUGAAGUCAGcgggagacauucaagUGACUUCAGGGGGCUUUGAAUGaggcucucagugaucacacu
....(((.(((((((.((.((((((((.(((((((((...(((....)))...))))))))).)))))))).)).))))))).))).........

Structure

-----agca   a       g  C        G         Gcg   g 
         acu ggggccu aU CAGAGCCC UUGAAGUCA   gga a
         ||| ||||||| || |||||||| |||||||||   |||  
         uga ucucgga UA GUUUCGGG GACUUCAGU   cuu c
ucacacuag   c       G  A        G         gaa   a 

Annotation confidence Not enough data

Genome context

AKHW03006295.1: 4406452-4406546 [-]

Mature ami-miR-1677b-5p

• Accession: MIMAT0038320
• Description: Alligator mississippiensis ami-miR-1677b-5p mature miRNA
• Sequence: 18 - UCCAGAGCCCGUUGAAGUCAG - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-1677b-3p

• Accession: MIMAT0038321
• Description: Alligator mississippiensis ami-miR-1677b-3p mature miRNA
• Sequence: 54 - UGACUUCAGGGGGCUUUGAAUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196