Stem-loop ami-mir-2188

Accession

MI0029860

Description

Alligator mississippiensis ami-mir-2188 precursor miRNA

Sequence

gaauaucagacccgugggaAAGGUCCAACCUCACAUGUCCuguaugucacgaggagggAUAUAUGUGGUCAGACCUAUCccacaggcccuguauucuu
(((((.(((..((((((((.(((((..(((.((.(((((((...(......)...))))))).)).)))..))))).)))))).))..))))))))..

Structure

--     u   ac  -      A     CA   U  C       gua gu 
  gaaua cag  cc guggga AGGUC  ACC CA AUGUCCu   u  c
  ||||| |||  || |||||| |||||  ||| || |||||||   |   
  cuuau guc  gg caccCU UCCAG  UGG GU UAUAggg   a  a
uu     -   cc  a      A     AC   U  A       agg gc 

Annotation confidence Not enough data

Genome context

AKHW03001890.1: 9735-9832 [+]

Mature ami-miR-2188-5p

• Accession: MIMAT0038333
• Description: Alligator mississippiensis ami-miR-2188-5p mature miRNA
• Sequence: 20 - AAGGUCCAACCUCACAUGUCC - 40
• Evidence: experimental ; Illumina [1]

Mature ami-miR-2188-3p

• Accession: MIMAT0038334
• Description: Alligator mississippiensis ami-miR-2188-3p mature miRNA
• Sequence: 59 - AUAUAUGUGGUCAGACCUAUC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196