miRBase entry: ami-mir-2970

Stem-loop ami-mir-2970

Accession

MI0029861

Description

Alligator mississippiensis ami-mir-2970 precursor miRNA

Sequence

cgggccucuuccugccacugcaGACAGUCAGCAGUUGGUCUGgcgugagcagcauucucAGAUCACCUCUUGGCUGUGGGuggugcagagagcgccgc
..(((((((..((((.(((((..((((((((.((.((((((((.(((.....)))..)))))))).)).))))))))..))))))))))))).)))..

Structure

cg   -    uc    c     aG        C  U        -c   a 
  ggc cucu  cugc acugc  ACAGUCAG AG UGGUCUGg  gug g
  ||| ||||  |||| |||||  |||||||| || ||||||||  ||| c
  ccg gaga  gacg ugguG  UGUCGGUU UC ACUAGAcu  uac a
cg   c    --    -     GG        C  C        cu   g

Annotation confidence Not enough data

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Genome context

AKHW03003150.1: 64489-64586 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-2970

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-2970-5p

Accession	MIMAT0038335
Description	Alligator mississippiensis ami-miR-2970-5p mature miRNA
Sequence	23 - GACAGUCAGCAGUUGGUCUG - 42
Evidence	experimental Illumina [1]

Mature ami-miR-2970-3p

Accession	MIMAT0038336
Description	Alligator mississippiensis ami-miR-2970-3p mature miRNA
Sequence	60 - AGAUCACCUCUUGGCUGUGGG - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196