Stem-loop ami-mir-2970

Accession

MI0029861

Description

Alligator mississippiensis ami-mir-2970 precursor miRNA

Sequence

cgggccucuuccugccacugcaGACAGUCAGCAGUUGGUCUGgcgugagcagcauucucAGAUCACCUCUUGGCUGUGGGuggugcagagagcgccgc
..(((((((..((((.(((((..((((((((.((.((((((((.(((.....)))..)))))))).)).))))))))..))))))))))))).)))..

Structure

cg   -    uc    c     aG        C  U        -c   a 
  ggc cucu  cugc acugc  ACAGUCAG AG UGGUCUGg  gug g
  ||| ||||  |||| |||||  |||||||| || ||||||||  ||| c
  ccg gaga  gacg ugguG  UGUCGGUU UC ACUAGAcu  uac a
cg   c    --    -     GG        C  C        cu   g 

Annotation confidence Not enough data

Genome context

AKHW03003150.1: 64489-64586 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-2970

Mature ami-miR-2970-5p

• Accession: MIMAT0038335
• Description: Alligator mississippiensis ami-miR-2970-5p mature miRNA
• Sequence: 23 - GACAGUCAGCAGUUGGUCUG - 42
• Evidence: experimental ; Illumina [1]

Mature ami-miR-2970-3p

• Accession: MIMAT0038336
• Description: Alligator mississippiensis ami-miR-2970-3p mature miRNA
• Sequence: 60 - AGAUCACCUCUUGGCUGUGGG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196