Stem-loop ami-mir-9604

Accession

MI0029871

Description

Alligator mississippiensis ami-mir-9604 precursor miRNA

Sequence

cuggagggggagCAGCAAGGACUAGGGACCCAAGAgacagagaauuaauuucUUGGUACUCCUGCCCUUGCAGauugugaaugcccugg
....((((...(((((((((....((((.((((((((...........))))))))...))))..))))))....))).....))))..

Structure

cugg    --gga   ----      ACUA    --C        caga 
    aggg     gCA    GCAAGG    GGGA   CCAAGAga    g
    ||||     |||    ||||||    ||||   ||||||||    a
    uccc     ugu    CGUUCC    UCCU   GGUUcuuu    a
--gg    guaag   uaGA      --CG    CAU        aauu 

Annotation confidence Not enough data

Genome context

AKHW03005996.1: 4735483-4735571 [+]

Mature ami-miR-9604-5p

• Accession: MIMAT0038352
• Description: Alligator mississippiensis ami-miR-9604-5p mature miRNA
• Sequence: 13 - CAGCAAGGACUAGGGACCCAAGA - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-9604-3p

• Accession: MIMAT0038353
• Description: Alligator mississippiensis ami-miR-9604-3p mature miRNA
• Sequence: 53 - UUGGUACUCCUGCCCUUGCAG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196