Stem-loop ami-mir-9611

Accession

MI0029878

Description

Alligator mississippiensis ami-mir-9611 precursor miRNA

Sequence

cuguaggaguuucuacCAGUACAGCUGUGCCAGUGAGGggccugaaguggugugauuccUGACUGACAUUGCUGUGCUAGCAgaagcuccuagua
...(((((((((((.(.((((((((.(((.((((.(((((((......))).....)))).)))).))).)))))))).).)))))))))))...

Structure

cug           a C        U   C    G    -----   ug 
   uaggaguuucu c AGUACAGC GUG CAGU AGGg     gcc  a
   ||||||||||| | |||||||| ||| |||| ||||     |||   
   auccucgaagA G UCGUGUCG UAC GUCA Uccu     ugg  a
aug           C A        U   A    G    uagug   ug 

Annotation confidence Not enough data

Genome context

AKHW03001077.1: 280390-280484 [+]

Mature ami-miR-9611-5p

• Accession: MIMAT0038366
• Description: Alligator mississippiensis ami-miR-9611-5p mature miRNA
• Sequence: 17 - CAGUACAGCUGUGCCAGUGAGG - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-9611-3p

• Accession: MIMAT0038367
• Description: Alligator mississippiensis ami-miR-9611-3p mature miRNA
• Sequence: 60 - UGACUGACAUUGCUGUGCUAGCA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196