Stem-loop cli-let-7b

Accession

MI0029886

Description

Columba livia cli-let-7b precursor miRNA

Sequence

870085 reads, 4506.0 reads per million, 30 experiments

ggaUGAGGUAGUAGGUUGUGUGGUUUcaggguagugauuuugccccagucaggagauaaCUAUACAACCUACUGCCUUCCcugauaagcagcauaacaac
(((..((((((((((((((((((((...((((((.....))))))..(((....))))))))))))))))))))))))))(((.....))).........

Structure

--------------------   UG                    ---------Uca      u 
                    gga  AGGUAGUAGGUUGUGUGGUU            ggguag g
                    |||  ||||||||||||||||||||            |||||| a
                    CCU  UCCGUCAUCCAACAUAUCaa            cccguu u
caacaauacgacgaauaguc   --                    uagaggacugac      u 

Annotation confidence High

Genome context

1: 62552165-62552264 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-let-7b

Mature cli-let-7b-5p

• Accession: MIMAT0059178
• Description: Columba livia cli-let-7b-5p mature miRNA
• Sequence: 4 - UGAGGUAGUAGGUUGUGUGGUUU - 26
• Evidence: experimental ; Illumina [1]

Mature cli-let-7b-3p

• Accession: MIMAT0038378
• Description: Columba livia cli-let-7b-3p mature miRNA
• Sequence: 60 - CUAUACAACCUACUGCCUUCC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196