Stem-loop cli-let-7i

Accession

MI0029892

Description

Columba livia cli-let-7i precursor miRNA

Literature search

1 open access papers mention cli-let-7i
(30 sentences)

Sequence

1225471 reads, 6426.0 reads per million, 30 experiments

cuggcUGAGGUAGUAGUUUGUGCUGUUggucggguugugacauugcccgcuguggagauaaCUGCGCAAGCUACUGCCUUGCUa
.((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))

Structure

c    U                 U   --------  u     ugu 
 uggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
 |||| ||||||||||||||||| |||        || |||||   a
 aUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
-    -                 U   uagaggug  -     uua 

Annotation confidence High

Genome context

1: 33686354-33686437 [+]

Mature cli-let-7i-5p

• Accession: MIMAT0038389
• Description: Columba livia cli-let-7i-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGUUUGUGCUGUU - 27
• Evidence: experimental ; Illumina [1]

Mature cli-let-7i-3p

• Accession: MIMAT0038390
• Description: Columba livia cli-let-7i-3p mature miRNA
• Sequence: 62 - CUGCGCAAGCUACUGCCUUGCU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196