miRBase entry: cli-mir-1a-2

Stem-loop cli-mir-1a-2

Accession

MI0029894

Description

Columba livia cli-mir-1a-2 precursor miRNA

Sequence

guaccugcccagaguACAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuuggcaggcau
...((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).))))))...

Structure

gua      c                     AC     ug aca 
   ccugcc agaguACAUACUUCUUUAUGU  CCAUA  a   u
   |||||| |||||||||||||||||||||  |||||  |    
   ggacgg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
uac      u                     -A     cg aac

Annotation confidence Not enough data

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Genome context

KB375298.1: 298704-298792 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-1a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-1a-3p

Accession	MIMAT0038392
Description	Columba livia cli-miR-1a-3p mature miRNA
Sequence	55 - UGGAAUGUAAAGAAGUAUGUAU - 76
Evidence	experimental Illumina [1]

Mature cli-miR-1a-2-5p

Accession	MIMAT0038393
Description	Columba livia cli-miR-1a-2-5p mature miRNA
Sequence	16 - ACAUACUUCUUUAUGUACCCAUA - 38
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196