Stem-loop cli-mir-7b

Accession

MI0029899

Description

Columba livia cli-mir-7b precursor miRNA

Sequence

7699 reads, 68.0 reads per million, 23 experiments

cauccccgggcaggcUGGAAGACUUGUGAUUUUGUUGUUUccaaugucaacgggagcgaACAACAAAUCCCAGUCUCCUCCcugccccgggcac
...(((.(((((((..(((.((((.(.(((((((((((((((.........)))))).))))..)))))).)))))))..))))))).)))...

Structure

cau   c       cU   A    U U     --    -      aau 
   ccc gggcagg  GGA GACU G GAUUU  UGUU GUUUcc   g
   ||| |||||||  ||| |||| | |||||  |||| ||||||   u
   ggg cccgucC  CCU CUGA C CUAAA  ACAa cgaggg   c
cac   c       CU   -    C -     CA    g      caa 

Annotation confidence High

Genome context

KB376649.1: 107537-107630 [-]

Mature cli-miR-7b-5p

• Accession: MIMAT0038400
• Description: Columba livia cli-miR-7b-5p mature miRNA
• Sequence: 16 - UGGAAGACUUGUGAUUUUGUUGUUU - 40
• Evidence: experimental ; Illumina [1]

Mature cli-miR-7b-3p

• Accession: MIMAT0059179
• Description: Columba livia cli-miR-7b-3p mature miRNA
• Sequence: 60 - ACAACAAAUCCCAGUCUCCUCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196