miRBase entry: cli-mir-15b

Stem-loop cli-mir-15b

Accession

MI0029907

Description

Columba livia cli-mir-15b precursor miRNA

Sequence

aggccuuaaaguacucUAGCAGCACAUCAUGGUUUGCAugcucuaauaaagaugCGAAUCAUUAUUUGCUGCUUUAgaaauuuaaggaag
...(((((((...((..(((((((.((.(((((((((((.((.......))))))))))))).)).)))))))..))...)))))))...

Structure

agg       gua  cU       C  C           g  cu 
   ccuuaaa   cu  AGCAGCA AU AUGGUUUGCAu cu  a
   |||||||   ||  ||||||| || ||||||||||| ||  a
   ggaauuu   gA  UCGUCGU UA UACUAAGCgua ga  u
gaa       aaa  UU       U  U           -  aa

Annotation confidence Not enough data

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Genome context

KB375540.1: 1615616-1615705 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-15b-5p

Accession	MIMAT0038412
Description	Columba livia cli-miR-15b-5p mature miRNA
Sequence	17 - UAGCAGCACAUCAUGGUUUGCA - 38
Evidence	experimental Illumina [1]

Mature cli-miR-15b-3p

Accession	MIMAT0038413
Description	Columba livia cli-miR-15b-3p mature miRNA
Sequence	55 - CGAAUCAUUAUUUGCUGCUUUA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196