miRBase entry: cli-mir-15c

Stem-loop cli-mir-15c

Accession

MI0029908

Description

Columba livia cli-mir-15c precursor miRNA

Sequence

gggcuuugaggagaugUAGCAGCACAUCAUGGUUUGUAgggacaaggagauaCAGACCAUUCUGGGCUGCCUCAuuaccucaaggaua
...((((((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).))))))))...

Structure

ggg        a    UA     A  UC          gggac 
   cuuugagg gaug  GCAGC CA  AUGGUUUGUA     a
   |||||||| ||||  ||||| ||  ||||||||||      
   ggaacucc uuAC  CGUCG GU  UACCAGACau     a
aua        a    UC     G  CU          agagg

Annotation confidence Not enough data

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Genome context

KB375349.1: 3554757-3554844 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-15c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-15c-5p

Accession	MIMAT0038414
Description	Columba livia cli-miR-15c-5p mature miRNA
Sequence	17 - UAGCAGCACAUCAUGGUUUGUA - 38
Evidence	experimental Illumina [1]

Mature cli-miR-15c-3p

Accession	MIMAT0038415
Description	Columba livia cli-miR-15c-3p mature miRNA
Sequence	53 - CAGACCAUUCUGGGCUGCCUCA - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196