miRBase entry: cli-mir-16a-2

Stem-loop cli-mir-16a-2

Accession

MI0029910

Description

Columba livia cli-mir-16a-2 precursor miRNA

Sequence

uuccgcccUAGCAGCACGUAAAUAUUGGUGUaguaaaauaaaccuuaaacCCCAAUAUUAUUGUGCUGCUUAAgcgugg
..((((.(((((((((((..((((((((.((..(((........))).)).))))))))..)))))))))..)).))))

Structure

uu    c  --         UA        U  ag   aau 
  ccgc cU  AGCAGCACG  AAUAUUGG GU  uaa   a
  |||| ||  |||||||||  |||||||| ||  |||    
  ggug gA  UCGUCGUGU  UUAUAACC ca  auu   a
--    c  AU         UA        C  -a   cca

Annotation confidence Not enough data

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Genome context

KB375540.1: 1615796-1615874 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-16a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-16a-5p

Accession	MIMAT0038416
Description	Columba livia cli-miR-16a-5p mature miRNA
Sequence	9 - UAGCAGCACGUAAAUAUUGGUGU - 31
Evidence	experimental Illumina [1]

Mature cli-miR-16a-2-3p

Accession	MIMAT0038418
Description	Columba livia cli-miR-16a-2-3p mature miRNA
Sequence	51 - CCCAAUAUUAUUGUGCUGCUUAA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196