miRBase entry: cli-mir-17

Stem-loop cli-mir-17

Accession

MI0029912

Description

Columba livia cli-mir-17 precursor miRNA

Sequence

ugcgucagaguaauguCAAAGUGCUUACAGUGCAGGUAgugauauauagaaccuACUGCAGUGAAGGCACUUGUAGCauuauguugacagc
.(((((((.(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...))))))).))))).))

Structure

u  -     a       -CA        A  G     GUA  gaua 
 gc gucag guaaugu   AAGUGCUU CA UGCAG   gu    u
 || ||||| |||||||   |||||||| || |||||   ||     
 cg caguu uauuaCG   UUCACGGA GU ACGUC   ca    a
-  a     g       AUG        A  G     Auc  agau

Annotation confidence Not enough data

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Genome context

KB375488.1: 2837957-2838047 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-17-5p

Accession	MIMAT0038421
Description	Columba livia cli-miR-17-5p mature miRNA
Sequence	17 - CAAAGUGCUUACAGUGCAGGUA - 38
Evidence	experimental Illumina [1]

Mature cli-miR-17-3p

Accession	MIMAT0038422
Description	Columba livia cli-miR-17-3p mature miRNA
Sequence	55 - ACUGCAGUGAAGGCACUUGUAGC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196