miRBase entry: cli-mir-18a

Stem-loop cli-mir-18a

Accession

MI0029913

Description

Columba livia cli-mir-18a precursor miRNA

Sequence

agugcuuuuuguacUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGGCauaagaaguuau
...(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).)))))))))...

Structure

agu         a   --   U    C   U    A   -  aa u 
   gcuuuuugu cUA  AGG GCAU UAG GCAG UAg ug  g a
   ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
   ugaagaaua GGU  UCC CGUG AUC CGUC Auc ac  u a
uau         C   CU   U    A   C    -   u  ga u

Annotation confidence Not enough data

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Genome context

KB375488.1: 2837808-2837898 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-18a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-18a-5p

Accession	MIMAT0038423
Description	Columba livia cli-miR-18a-5p mature miRNA
Sequence	15 - UAAGGUGCAUCUAGUGCAGAUA - 36
Evidence	experimental Illumina [1]

Mature cli-miR-18a-3p

Accession	MIMAT0038424
Description	Columba livia cli-miR-18a-3p mature miRNA
Sequence	56 - ACUGCCCUAAGUGCUCCUUCUGGC - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196