miRBase entry: cli-mir-19b-1

Stem-loop cli-mir-19b-1


Accession
MI0029916
Description
Columba livia cli-mir-19b-1 precursor miRNA


Sequence

226579 reads, 1594.0 reads per million, 30 experiments
cucugguuAGUUUUGCAGGUUUGCAUCCAGCUGuaugauacucugcUGUGCAAAUCCAUGCAAAACUGAcugugg
....(((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))....

Structure
cucu             -  -      UC    UGuau 
    gguuAGUUUUGCA GG UUUGCA  CAGC     g
    ||||||||||||| || ||||||  ||||     a
    ucAGUCAAAACGU CC AAACGU  GUcg     u
ggug             A  U      --    ucuca 


Annotation confidence High
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Genome context
1: 151882948-151883022 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cli-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-19b-5p

Accession MIMAT0038429
Description Columba livia cli-miR-19b-5p mature miRNA
Sequence 9 - AGUUUUGCAGGUUUGCAUCCAGCUG - 33
Evidence experimental
Illumina [1]

Mature cli-miR-19b-3p

Accession MIMAT0038430
Description Columba livia cli-miR-19b-3p mature miRNA
Sequence 47 - UGUGCAAAUCCAUGCAAAACUGA - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196