miRBase entry: cli-mir-19b-2

Stem-loop cli-mir-19b-2

Accession

MI0029917

Description

Columba livia cli-mir-19b-2 precursor miRNA

Sequence

cagugcuaauuacagucAGUUUUGCAGGUUUGCAUCCCAGCuuacuaaaauugcUGUGCAAAUCCAUGCAAAACUGAcuguggugguggug
((.(((((.(((((((((((((((((((((((((...((((...........)))))))))).)).)))))))))))))))))))))).))

Structure

  g     a                 -  -      UCC    uuac 
ca ugcua uuacagucAGUUUUGCA GG UUUGCA   CAGC    u
|| ||||| ||||||||||||||||| || ||||||   ||||    a
gu guggu ggugucAGUCAAAACGU CC AAACGU   GUcg    a
  g     -                 A  U      ---    uuaa

Annotation confidence Not enough data

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Genome context

KB375349.1: 3451977-3452067 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-19b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-19b-3p

Accession	MIMAT0038430
Description	Columba livia cli-miR-19b-3p mature miRNA
Sequence	55 - UGUGCAAAUCCAUGCAAAACUGA - 77
Evidence	experimental Illumina [1]

Mature cli-miR-19b-2-5p

Accession	MIMAT0038431
Description	Columba livia cli-miR-19b-2-5p mature miRNA
Sequence	18 - AGUUUUGCAGGUUUGCAUCCCAGC - 41
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196