Stem-loop cli-mir-29a-1

Accession

MI0029926

Description

Columba livia cli-mir-29a-1 precursor miRNA

Sequence

106186 reads, 498.0 reads per million, 29 experiments

aggaugACUGAUUUCUUUUGGUGUUCAGagucaauaauauuuucUAGCACCAUUUGAAAUCGGUUauagu
...((((((((((((...(((((((.((((...........)))))))))))...))))))))))))...

Structure

agg            UUU       C    ucaa 
   augACUGAUUUC   UGGUGUU AGag    u
   ||||||||||||   ||||||| ||||    a
   uaUUGGCUAAAG   ACCACGA Ucuu    a
uga            UUU       -    uuau 

Annotation confidence High

Genome context

1: 3141058-3141127 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-29a-1

Mature cli-miR-29a-5p

• Accession: MIMAT0038447
• Description: Columba livia cli-miR-29a-5p mature miRNA
• Sequence: 7 - ACUGAUUUCUUUUGGUGUUCAG - 28
• Evidence: experimental ; Illumina [1]

Mature cli-miR-29a-3p

• Accession: MIMAT0038448
• Description: Columba livia cli-miR-29a-3p mature miRNA
• Sequence: 45 - UAGCACCAUUUGAAAUCGGUU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196