Stem-loop cli-mir-29a-2

Accession

MI0029927

Description

Columba livia cli-mir-29a-2 precursor miRNA

Sequence

138203 reads, 648.0 reads per million, 29 experiments

augucucuuacacaggcUGACCGAUUUCUCUUGGUGUUCagagucucaguuuuugucUAGCACCAUUUGAAAUCGGUUAUGauguagggggaaa
...(((((((((((...(((((((((((...(((((((.(((.............))))))))))...))))))))))))).)))))))))...

Structure

aug         -  ggc           UCU       C   gucuc 
   ucucuuaca ca   UGACCGAUUUC   UGGUGUU aga     a
   ||||||||| ||   |||||||||||   ||||||| |||     g
   gggggaugu GU   AUUGGCUAAAG   ACCACGA Ucu     u
aaa         a  ---           UUU       -   guuuu 

Annotation confidence Medium

Genome context

26: 1231796-1231889 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-29a-2

Mature cli-miR-29a-2-5p

• Accession: MIMAT0059180
• Description: Columba livia cli-miR-29a-2-5p mature miRNA
• Sequence: 18 - UGACCGAUUUCUCUUGGUGUUC - 39
• Evidence: experimental ; Illumina [1]

Mature cli-miR-29a-3p

• Accession: MIMAT0038448
• Description: Columba livia cli-miR-29a-3p mature miRNA
• Sequence: 58 - UAGCACCAUUUGAAAUCGGUUAUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196