Stem-loop cli-mir-29b-2

Accession

MI0029929

Description

Columba livia cli-mir-29b-2 precursor miRNA

Sequence

38415 reads, 190.0 reads per million, 29 experiments

ccucuggaagCUGGUUUCACAUGGUGGCUUAGAUUuucccacuuuguauCUAGCACCAUUUGAAAUCAGUGUUcuaggag
..(((((((((((((((((.((((((.((.((((.............)))))))))))).)))))))))).)))))))..

Structure

cc       -          C      G  U    Uuucc 
  ucuggaa gCUGGUUUCA AUGGUG CU AGAU     c
  ||||||| |||||||||| |||||| || ||||     a
  ggaucUU UGACUAAAGU UACCAC GA UCua     c
ga       G          U      -  -    uguuu 

Annotation confidence High

Genome context

26: 1230939-1231018 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-29b-2

Mature cli-miR-29b-2-5p

• Accession: MIMAT0059181
• Description: Columba livia cli-miR-29b-2-5p mature miRNA
• Sequence: 11 - CUGGUUUCACAUGGUGGCUUAGAUU - 35
• Evidence: experimental ; Illumina [1]

Mature cli-miR-29b-3p

• Accession: MIMAT0038450
• Description: Columba livia cli-miR-29b-3p mature miRNA
• Sequence: 50 - CUAGCACCAUUUGAAAUCAGUGUU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196