Stem-loop cli-mir-30a

Accession

MI0029930

Description

Columba livia cli-mir-30a precursor miRNA

Literature search

1 open access papers mention cli-mir-30a
(1 sentences)

Sequence

7278953 reads, 31987.0 reads per million, 30 experiments

ugagcgacUGUAAACAUCCUCGACUGGAAGCUgugaagcagcagauggggCUUUCAGUCGGAUGUUUGCAGCUGccaa
((.(((.((((((((((((..(((((((((((.(............).))))))))))))))))))))))).))))).

Structure

-  a   a            UC           g gaagc 
 ug gcg cUGUAAACAUCC  GACUGGAAGCU u     a
 || ||| ||||||||||||  ||||||||||| |      
 ac cGU GACGUUUGUAGG  CUGACUUUCgg g     g
a  -   C            --           g uagac 

Annotation confidence High

Genome context

3: 81710884-81710961 [+]

Mature cli-miR-30a-5p

• Accession: MIMAT0038451
• Description: Columba livia cli-miR-30a-5p mature miRNA
• Sequence: 9 - UGUAAACAUCCUCGACUGGAAGCU - 32
• Evidence: experimental ; Illumina [1]

Mature cli-miR-30a-3p

• Accession: MIMAT0038452
• Description: Columba livia cli-miR-30a-3p mature miRNA
• Sequence: 51 - CUUUCAGUCGGAUGUUUGCAGCUG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196