Stem-loop cli-mir-31

Accession

MI0029935

Description

Columba livia cli-mir-31 precursor miRNA

Sequence

5570 reads, 990.0 reads per million, 26 experiments

ugugcagagcuggaggggAGGCAAGAUGUUGGCAUAGCUGUagaccuaaaaaccugcUAUGCCAACAUAUUGUCAUCUUuccucucuguuug
...((((((..(((((((.(((((.(((((((((((((.................))))))))))))).))))).))))))).))))))...

Structure

ugu      cu       A     G             UGUagac 
   gcagag  ggagggg GGCAA AUGUUGGCAUAGC       c
   ||||||  ||||||| ||||| |||||||||||||       u
   ugucuc  ccuUUCU CUGUU UACAACCGUAUcg       a
guu      -u       A     A             uccaaaa 

Annotation confidence High

Genome context

gb|KV878003.1|: 6280245-6280336 [+]

Mature cli-miR-31-5p

• Accession: MIMAT0038460
• Description: Columba livia cli-miR-31-5p mature miRNA
• Sequence: 19 - AGGCAAGAUGUUGGCAUAGCUGU - 41
• Evidence: experimental ; Illumina [1]

Mature cli-miR-31-3p

• Accession: MIMAT0038461
• Description: Columba livia cli-miR-31-3p mature miRNA
• Sequence: 58 - UAUGCCAACAUAUUGUCAUCUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196