miRBase entry: cli-mir-34b

Stem-loop cli-mir-34b


Accession
MI0029940
Description
Columba livia cli-mir-34b precursor miRNA


Sequence

797 reads, 86.0 reads per million, 29 experiments
gugcuugguuuguAGGCAGUGUAGUUAGCUGAUUGuaaccacugcuccgcAAUCACUACACUCACUGCCAUCaaaacaaggcacagg
((((((.((((...(((((((.((((((.(((((((............)))))))))).))))))))))....)))).))))))...

Structure
---      g    -guA       U   -   C       aacca 
   gugcuu guuu    GGCAGUG AGU UAG UGAUUGu     c
   |||||| ||||    ||||||| ||| ||| |||||||      
   cacgga caaa    CCGUCAC UCA AUC ACUAAcg     u
gga      a    aCUA       -   C   -       ccucg 


Annotation confidence High
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Genome context
24: 3873716-3873802 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-34b-5p

Accession MIMAT0038469
Description Columba livia cli-miR-34b-5p mature miRNA
Sequence 14 - AGGCAGUGUAGUUAGCUGAUUG - 35
Evidence experimental
Illumina [1]

Mature cli-miR-34b-3p

Accession MIMAT0038470
Description Columba livia cli-miR-34b-3p mature miRNA
Sequence 51 - AAUCACUACACUCACUGCCAUC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196