Stem-loop cli-mir-92-2

Accession

MI0029943

Description

Columba livia cli-mir-92-2 precursor miRNA

Sequence

2212324 reads, 16765.0 reads per million, 30 experiments

ugguuucuccauggGUGGGGAUUUGUUGCAUUACUUguagcuguauguagagUAUUGCACUUGUCCCGGCCUGUggaggaaaug
...(((((((((((((.(((((..((.(((.(((((...((.....)).))))).)))))..))))).)))))))))))))...

Structure

ugg             G     UU  U   U     gua  u 
   uuucuccauggGU GGGAU  GU GCA UACUU   gc g
   ||||||||||||| |||||  || ||| |||||   || u
   aaggaggUGUCCG CCCUG  CA CGU AUgag   ug a
gua             G     UU  -   U     --a  u 

Annotation confidence High

Genome context

4A: 13758753-13758836 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-92-2

Mature cli-miR-92-2-5p

• Accession: MIMAT0038475
• Description: Columba livia cli-miR-92-2-5p mature miRNA
• Sequence: 15 - GUGGGGAUUUGUUGCAUUACUU - 36
• Evidence: experimental ; Illumina [1]

Mature cli-miR-92-3p

• Accession: MIMAT0038474
• Description: Columba livia cli-miR-92-3p mature miRNA
• Sequence: 53 - UAUUGCACUUGUCCCGGCCUGU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196