Stem-loop cli-mir-128-1

Accession

MI0029959

Description

Columba livia cli-mir-128-1 precursor miRNA

Sequence

713176 reads, 3987.0 reads per million, 30 experiments

gagcuguuggauuCGGGGCCGUAACACUGUCUGAGAgguuuacauuucUCACAGUGAACCGGUCUCUUUUucagcugcuuccug
((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).))))....

Structure

----    u      uuC       UAA      CU       u 
    gagc guugga   GGGGCCG   CACUGU  GAGAggu u
    |||| ||||||   |||||||   ||||||  |||||||  
    uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
gucc    u      UUU       CAA      --       c 

Annotation confidence High

Genome context

6: 29639696-29639779 [+]

Mature cli-miR-128-1-5p

• Accession: MIMAT0059183
• Description: Columba livia cli-miR-128-1-5p mature miRNA
• Sequence: 14 - CGGGGCCGUAACACUGUCUGAGA - 36
• Evidence: experimental ; Illumina [1]

Mature cli-miR-128-3p

• Accession: MIMAT0038501
• Description: Columba livia cli-miR-128-3p mature miRNA
• Sequence: 49 - UCACAGUGAACCGGUCUCUUUU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196