Stem-loop cli-mir-130c

Accession

MI0029963

Description

Columba livia cli-mir-130c precursor miRNA

Literature search

1 open access papers mention cli-mir-130c
(1 sentences)

Sequence

314234 reads, 1765.0 reads per million, 30 experiments

gugcuguuguccagaGCCCUUUUUCUGUUGUACUACUGGcaauuaugaugagCAGUGCAAUAUUAAAAGGGCAUUGGcuggcagaaa
...((((((.((((.((((((((..(((((((((.((.(((....)).).)).)))))))))..)))))))).)))).))))))...

Structure

gug      u    a        UC         A  G -  a 
   cuguug ccag GCCCUUUU  UGUUGUACU CU G ca u
   |||||| |||| ||||||||  ||||||||| || | ||  
   gacggu GGUU CGGGAAAA  AUAACGUGA ga u gu u
aaa      c    A        UU         C  g a  a 

Annotation confidence Medium

Genome context

15: 505475-505561 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-130c

Mature cli-miR-130c-5p

• Accession: MIMAT0038507
• Description: Columba livia cli-miR-130c-5p mature miRNA
• Sequence: 16 - GCCCUUUUUCUGUUGUACUACUGG - 39
• Evidence: experimental ; Illumina [1]

Mature cli-miR-130c-3p

• Accession: MIMAT0038508
• Description: Columba livia cli-miR-130c-3p mature miRNA
• Sequence: 53 - CAGUGCAAUAUUAAAAGGGCAUUGG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196