miRBase entry: cli-mir-133a-1

Stem-loop cli-mir-133a-1

Accession

MI0029964

Description

Columba livia cli-mir-133a-1 precursor miRNA

Sequence

cuccaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUCaccucuucaauggaUUUGGUCCCCUUCAACCAGCUGUagcuaugcauugauc
...((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))...

Structure

cuc      uuu    a       AA  U  A        accuc 
   caaugc   gcua AGCUGGU  AA GG ACCAAAUC     u
   ||||||   |||| |||||||  || || ||||||||      
   guuacg   cgaU UCGACCA  UU CC UGGUUUag     u
cua      uau    G       AC  C  C        guaac

Annotation confidence Not enough data

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Genome context

KB375298.1: 295624-295715 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-133a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-133a-5p

Accession	MIMAT0038509
Description	Columba livia cli-miR-133a-5p mature miRNA
Sequence	18 - AGCUGGUAAAAUGGAACCAAAUC - 40
Evidence	experimental Illumina [1]

Mature cli-miR-133a-3p

Accession	MIMAT0038510
Description	Columba livia cli-miR-133a-3p mature miRNA
Sequence	55 - UUUGGUCCCCUUCAACCAGCUGU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196