Stem-loop cli-mir-138-1

Accession

MI0029973

Description

Columba livia cli-mir-138-1 precursor miRNA

Sequence

26500 reads, 163.0 reads per million, 28 experiments

ucaggugccgugcagcAGCUGGUGUUGUGAAUCAGGCCGUcaccagucggagaacgGCUACUUCACAACACCAGGGUcgcaccgcaccaca
...(((((.((((.((..(((((((((((((...(((((((.((....)).).))))))..))))))))))))).)).)))).)))))...

Structure

uca     c    a  AG             UCA      - a  a 
   ggugc gugc gc  CUGGUGUUGUGAA   GGCCGU c cc g
   ||||| |||| ||  |||||||||||||   |||||| | ||  
   ccacg cacg UG  GACCACAACACUU   UCGgca g gg u
aca     c    c  -G             -CA      a a  c 

Annotation confidence High

Genome context

gb|KV877995.1|: 879534-879624 [-]

Mature cli-miR-138-5p

• Accession: MIMAT0038522
• Description: Columba livia cli-miR-138-5p mature miRNA
• Sequence: 17 - AGCUGGUGUUGUGAAUCAGGCCGU - 40
• Evidence: experimental ; Illumina [1]

Mature cli-miR-138-3p

• Accession: MIMAT0038523
• Description: Columba livia cli-miR-138-3p mature miRNA
• Sequence: 57 - GCUACUUCACAACACCAGGGU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196