Stem-loop cli-mir-142

Accession

MI0029977

Description

Columba livia cli-mir-142 precursor miRNA

Sequence

928051 reads, 5431.0 reads per million, 30 experiments

gagacagugcagucaccCAUAAAGUAGAAAGCACUACUaaacagcacugcaggguGUAGUGUUUCCUACUUUAUGGAugaguguacuguggg
...((((((((.(((.(((((((((((.(((((((((....(.((...)).)...))))))))).))))))))))).))).))))))))...

Structure

gag        g   c           A         Uaaa a  a 
   acagugca uca cCAUAAAGUAG AAGCACUAC    c gc  
   |||||||| ||| ||||||||||| |||||||||    | || c
   ugucaugu agu GGUAUUUCAUC UUUGUGAUG    g cg  
ggg        g   A           C         -ugg a  u 

Annotation confidence High

Genome context

gb|KV877990.1|: 1011537-1011628 [+]

Mature cli-miR-142-5p

• Accession: MIMAT0038529
• Description: Columba livia cli-miR-142-5p mature miRNA
• Sequence: 18 - CAUAAAGUAGAAAGCACUACU - 38
• Evidence: experimental ; Illumina [1]

Mature cli-miR-142-3p

• Accession: MIMAT0038530
• Description: Columba livia cli-miR-142-3p mature miRNA
• Sequence: 56 - GUAGUGUUUCCUACUUUAUGGA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196