Stem-loop cli-mir-145

Accession

MI0029979

Description

Columba livia cli-mir-145 precursor miRNA

Sequence

193054 reads, 971.0 reads per million, 28 experiments

ccgugcccucaggGUCCAGUUUUCCCAGGAAUCCCUUaggcgcuacguuggggAUUCCUGGAAAUACUGUUCUUgaggccacgg
(((((.((((((((..((((.((.((((((((((((..((((...)))))))))))))))).)).)))).)))))))).)))))

Structure

     c        UC    U  C            Ua    c 
ccgug ccucaggG  CAGU UU CCAGGAAUCCCU  ggcg  
||||| ||||||||  |||| || ||||||||||||  |||| u
ggcac ggagUUCU  GUCA AA GGUCCUUAgggg  uugc  
     c        -U    U  A            --    a 

Annotation confidence High

Genome context

13: 17677912-17677995 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-145

Mature cli-miR-145-5p

• Accession: MIMAT0038533
• Description: Columba livia cli-miR-145-5p mature miRNA
• Sequence: 14 - GUCCAGUUUUCCCAGGAAUCCCUU - 37
• Evidence: experimental ; Illumina [1]

Mature cli-miR-145-3p

• Accession: MIMAT0038534
• Description: Columba livia cli-miR-145-3p mature miRNA
• Sequence: 54 - AUUCCUGGAAAUACUGUUCUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196