Stem-loop cli-mir-146a

Accession

MI0029980

Description

Columba livia cli-mir-146a precursor miRNA

Sequence

1026007 reads, 10512.0 reads per million, 30 experiments

cguguauucucagcuuUGAGAACUGAAUUCCAUGGGUUGUaauugaauucgcugucagACCCAUGGGGCUCAGUUCUUCAgcuuggauauuuc
...((((((..((((..(((((((((.(((((((((((.....(((........)))))))))))))).))))))))).)))).))))))...

Structure

cgu      uc    uU         A           GUaau   auu 
   guauuc  agcu  GAGAACUGA UUCCAUGGGUU     uga   c
   ||||||  ||||  ||||||||| |||||||||||     |||    
   uauagg  ucgA  UUCUUGACU GGGGUACCCAg     acu   g
cuu      -u    -C         C           -----   guc 

Annotation confidence High

Genome context

13: 7864218-7864310 [-]

Mature cli-miR-146a-5p

• Accession: MIMAT0038535
• Description: Columba livia cli-miR-146a-5p mature miRNA
• Sequence: 17 - UGAGAACUGAAUUCCAUGGGUUGU - 40
• Evidence: experimental ; Illumina [1]

Mature cli-miR-146a-3p

• Accession: MIMAT0038536
• Description: Columba livia cli-miR-146a-3p mature miRNA
• Sequence: 59 - ACCCAUGGGGCUCAGUUCUUCA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196