Stem-loop cli-mir-146c

Accession

MI0029982

Description

Columba livia cli-mir-146c precursor miRNA

Sequence

3613558 reads, 31871.0 reads per million, 30 experiments

guucccagcucUGAGAACUGAAUUCCAUGGACUGguuccaguuccauguguucaGUCCAUGGUAUUCAGUUCUCUagcuuggcug
...((.((((..(((((((((((.(((((((((((...((......))...))))))))))).))))))))))).)))).))...

Structure

guu  c    cU           U           uuc  gu 
   cc agcu  GAGAACUGAAU CCAUGGACUGg   ca  u
   || ||||  ||||||||||| |||||||||||   ||   
   gg ucga  CUCUUGACUUA GGUACCUGacu   gu  c
guc  u    -U           U           ugu  ac 

Annotation confidence High

Genome context

4: 58424962-58425046 [-]

Mature cli-miR-146c-5p

• Accession: MIMAT0038539
• Description: Columba livia cli-miR-146c-5p mature miRNA
• Sequence: 12 - UGAGAACUGAAUUCCAUGGACUG - 34
• Evidence: experimental ; Illumina [1]

Mature cli-miR-146c-3p

• Accession: MIMAT0038540
• Description: Columba livia cli-miR-146c-3p mature miRNA
• Sequence: 55 - GUCCAUGGUAUUCAGUUCUCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196