Stem-loop cli-mir-148a

Accession

MI0029984

Description

Columba livia cli-mir-148a precursor miRNA

Literature search

1 open access papers mention cli-mir-148a
(2 sentences)

Sequence

14428784 reads, 95414.0 reads per million, 30 experiments

ggagccuccggaagcAAAGUUCUGUGACACUCCGACUcuggguacgauagcagUCAGUGCACUACAGAACUUUGUcuccggcggc
...(((.(((((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).))))).)))

Structure

gga   u     a             --A    CC    -   gg 
   gcc ccgga gcAAAGUUCUGUG   CACU  GACU cug  u
   ||| ||||| |||||||||||||   ||||  |||| |||  a
   cgg ggccu UGUUUCAAGACAU   GUGA  CUga gau  c
---   c     c             CAC    --    c   ag 

Annotation confidence High

Genome context

gb|KV877994.1|: 5020925-5021009 [+]

Mature cli-miR-148a-5p

• Accession: MIMAT0038542
• Description: Columba livia cli-miR-148a-5p mature miRNA
• Sequence: 16 - AAAGUUCUGUGACACUCCGACU - 37
• Evidence: experimental ; Illumina [1]

Mature cli-miR-148a-3p

• Accession: MIMAT0038543
• Description: Columba livia cli-miR-148a-3p mature miRNA
• Sequence: 54 - UCAGUGCACUACAGAACUUUGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196