miRBase entry: cli-mir-183

Stem-loop cli-mir-183

Accession

MI0029994

Description

Columba livia cli-mir-183 precursor miRNA

Sequence

uacuccuguucugugUAUGGCACUGGUAGAAUUCACUGugcaaccccgcggucagUGAAUUACCAUAGGGCCAUAAAcagagcagagaaag
...(((((((((((.((((((..(((((..(((((((((((......)))..)))))))))))))....)))))).))))))))).))...

Structure

uac  -         g      --AC     GA        --   aa 
   uc cuguucugu UAUGGC    UGGUA  AUUCACUG  ugc  c
   || ||||||||| ||||||    |||||  ||||||||  |||   
   ag gacgagacA AUACCG    ACCAU  UAAGUgac  gcg  c
gaa  a         A      GGAU     --        ug   cc

Annotation confidence Not enough data

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Genome context

KB375435.1: 1261576-1261666 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-183

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-183-5p

Accession	MIMAT0038558
Description	Columba livia cli-miR-183-5p mature miRNA
Sequence	16 - UAUGGCACUGGUAGAAUUCACUG - 38
Evidence	experimental Illumina [1]

Mature cli-miR-183-3p

Accession	MIMAT0038559
Description	Columba livia cli-miR-183-3p mature miRNA
Sequence	56 - UGAAUUACCAUAGGGCCAUAAA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196