Stem-loop cli-mir-194

Accession

MI0029999

Description

Columba livia cli-mir-194 precursor miRNA

Sequence

4893 reads, 1346.0 reads per million, 29 experiments

caugggcgcucucagaUGUAACAGCAACUCCAUGUGGACUacacugacuuCCAGUGGAGAUGCUGUUACUUUUGauagccucuca
...(((.(((.(((((.(((((((((.((((((.((((...........)))))))))).))))))))).))))).))))))...

Structure

cau   c   c     U         A      G    CUac 
   ggg gcu ucaga GUAACAGCA CUCCAU UGGA    a
   ||| ||| ||||| ||||||||| |||||| ||||    c
   cuc cga aGUUU CAUUGUCGU GAGGUG ACCu    u
acu   -   u     U         A      -    ucag 

Annotation confidence High

Genome context

3: 13332112-13332196 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-194

Mature cli-miR-194-5p

• Accession: MIMAT0038568
• Description: Columba livia cli-miR-194-5p mature miRNA
• Sequence: 17 - UGUAACAGCAACUCCAUGUGGACU - 40
• Evidence: experimental ; Illumina [1]

Mature cli-miR-194-3p

• Accession: MIMAT0038569
• Description: Columba livia cli-miR-194-3p mature miRNA
• Sequence: 51 - CCAGUGGAGAUGCUGUUACUUUUG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196