Stem-loop cli-mir-196-1

Accession

MI0030000

Description

Columba livia cli-mir-196-1 precursor miRNA

Sequence

17886 reads, 94.0 reads per million, 26 experiments

cucugugaauUAGGUAGUUUCAUGUUGUUGGGcuuuuaauuuuaaacaCAAGAACAUCAAACUACCUGAUUuacucc
....((((((((((((((((.(((((.(((..................))).))))).))))))))))))))))...

Structure

cucu                C     G   GGcuuuua 
    gugaauUAGGUAGUUU AUGUU UUG        a
    |||||||||||||||| ||||| |||         
    cauUUAGUCCAUCAAA UACAA AAC        u
-ccu                C     G   acaaauuu 

Annotation confidence High

Genome context

27: 1995055-1995131 [+]

Mature cli-miR-196-5p

• Accession: MIMAT0038570
• Description: Columba livia cli-miR-196-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
• Evidence: experimental ; Illumina [1]

Mature cli-miR-196-3p

• Accession: MIMAT0038571
• Description: Columba livia cli-miR-196-3p mature miRNA
• Sequence: 49 - CAAGAACAUCAAACUACCUGAUU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196