Stem-loop cli-mir-196-2

Accession

MI0030001

Description

Columba livia cli-mir-196-2 precursor miRNA

Sequence

19966 reads, 106.0 reads per million, 25 experiments

ugcagcugaucugugguuUAGGUAGUUUCAUGUUGUUGGGauuggcuuuuagcUCGGCAACAAGAAACUGCCUuaauuacgucaguuagucu
.(((((((((..((((((.((((((((((.((((((((((.(((.....))))))))))))).)))))))))).))))))))))))).))..

Structure

-u  -       cu      U          A          a   g 
  gc agcugau  gugguu AGGUAGUUUC UGUUGUUGGG uug c
  || |||||||  |||||| |||||||||| |||||||||| ||| u
  ug uugacug  cauuaa UCCGUCAAAG ACAACGGCUc gau u
uc  a       --      u          A          -   u 

Annotation confidence Not enough data

Genome context

KB376284.1: 197727-197818 [+]

Mature cli-miR-196-5p

• Accession: MIMAT0038570
• Description: Columba livia cli-miR-196-5p mature miRNA
• Sequence: 19 - UAGGUAGUUUCAUGUUGUUGGG - 40
• Evidence: experimental ; Illumina [1]

Mature cli-miR-196-2-3p

• Accession: MIMAT0059186
• Description: Columba livia cli-miR-196-2-3p mature miRNA
• Sequence: 54 - UCGGCAACAAGAAACUGCCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196