Stem-loop cli-mir-199-2

Accession

MI0030004

Description

Columba livia cli-mir-199-2 precursor miRNA

Sequence

5765610 reads, 25966.0 reads per million, 29 experiments

cuccgucugCCCAGUGUUCAGACUACCUGUUcaggacuacgagauuguACAGUAGUCUGCACAUUGGUUaggcugugc
....(((((.(((((((.((((((((.(((.(((..........))).))))))))))).))))))).))))).....

Structure

-cucc     C       U        C   U   gacu 
     gucug CCAGUGU CAGACUAC UGU cag    a
     ||||| ||||||| |||||||| ||| |||     
     cggaU GGUUACA GUCUGAUG ACA guu    c
cgugu     U       C        -   u   agag 

Annotation confidence High

Genome context

17: 5070194-5070271 [+]

Mature cli-miR-199-5p

• Accession: MIMAT0038573
• Description: Columba livia cli-miR-199-5p mature miRNA
• Sequence: 10 - CCCAGUGUUCAGACUACCUGUU - 31
• Evidence: experimental ; Illumina [1]

Mature cli-miR-199-3p

• Accession: MIMAT0038574
• Description: Columba livia cli-miR-199-3p mature miRNA
• Sequence: 49 - ACAGUAGUCUGCACAUUGGUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196