Stem-loop cli-mir-221

Accession

MI0030022

Description

Columba livia cli-mir-221 precursor miRNA

Sequence

214733 reads, 3702.0 reads per million, 30 experiments

uggggcaugaACCUGGCAUACAAUGUAGAUUUCUGuguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUCcagc
(((.....((((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))))))))..

Structure

--   ggcau          U         AUUU    -    g 
  ugg     gaACCUGGCA ACAAUGUAG    CUGu guuu  
  |||     |||||||||| |||||||||    |||| |||| u
  acC     UUUGGGUCGU UGUUACAUC    GAca cgaa  
cg   -----          C         ----    a    u 

Annotation confidence High

Genome context

1: 109736876-109736952 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-221

Mature cli-miR-221-5p

• Accession: MIMAT0038604
• Description: Columba livia cli-miR-221-5p mature miRNA
• Sequence: 11 - ACCUGGCAUACAAUGUAGAUUUCUG - 35
• Evidence: experimental ; Illumina [1]

Mature cli-miR-221-3p

• Accession: MIMAT0038605
• Description: Columba livia cli-miR-221-3p mature miRNA
• Sequence: 51 - AGCUACAUUGUCUGCUGGGUUUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196