Stem-loop cli-mir-222a

Accession

MI0030023

Description

Columba livia cli-mir-222a precursor miRNA

Sequence

791281 reads, 7147.0 reads per million, 30 experiments

uguaguugcucaucaauCGCUCAGUAGUCAGUGUAGAUCCUGucuuuacaaucagcAGCUACAUCUGGCUACUGGGUCUCUgaugacaacucgu
.(.(((((.((((((...((((((((((((((((((...(((..........)))...))))).)))))))))))))...))))))))))))..

Structure

-u u     c      auC             -     AUC   ucuu 
  g aguug ucauca   GCUCAGUAGUCAG UGUAG   CUG    u
  | ||||| ||||||   ||||||||||||| |||||   |||     
  c ucaac aguagU   UGGGUCAUCGGUC ACAUC   gac    a
ug -     -      CUC             U     GAc   uaac 

Annotation confidence High

Genome context

1: 109737387-109737480 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-222a

Mature cli-miR-222a-5p

• Accession: MIMAT0038606
• Description: Columba livia cli-miR-222a-5p mature miRNA
• Sequence: 18 - CGCUCAGUAGUCAGUGUAGAUCCUG - 42
• Evidence: experimental ; Illumina [1]

Mature cli-miR-222a-3p

• Accession: MIMAT0038607
• Description: Columba livia cli-miR-222a-3p mature miRNA
• Sequence: 57 - AGCUACAUCUGGCUACUGGGUCUCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196