Stem-loop cli-mir-223

Accession

MI0030025

Description

Columba livia cli-mir-223 precursor miRNA

Sequence

59855 reads, 487.0 reads per million, 30 experiments

agcgcggugccgcgcugCGUGUAUUUGACAAGCUGAGUCcgacacucagugcgagagUGUCAGUUUGUCAAAUACCCCAagcgaggcacugcuga
...((((((((.((((....((((((((((((((......(((((((.......)))))))))))))))))))))....)))).))))))))...

Structure

agc        g    gCGU              GAGUCc       ag 
   gcggugcc cgcu    GUAUUUGACAAGCU      gacacuc  u
   |||||||| ||||    ||||||||||||||      |||||||  g
   cgucacgg gcga    CAUAAACUGUUUGA      CUGUgag  c
agu        a    ACCC              ------       ag 

Annotation confidence High

Genome context

gb|KV878006.1|: 204593-204687 [+]

Mature cli-miR-223-5p

• Accession: MIMAT0038609
• Description: Columba livia cli-miR-223-5p mature miRNA
• Sequence: 18 - CGUGUAUUUGACAAGCUGAGUC - 39
• Evidence: experimental ; Illumina [1]

Mature cli-miR-223-3p

• Accession: MIMAT0038610
• Description: Columba livia cli-miR-223-3p mature miRNA
• Sequence: 58 - UGUCAGUUUGUCAAAUACCCCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196