Stem-loop cli-mir-365-1

Accession

MI0030035

Description

Columba livia cli-mir-365-1 precursor miRNA

Sequence

40730 reads, 686.0 reads per million, 30 experiments

accgcagggaaaaugAGGGACUUUUGGGGGCAGAUGUGUuuccauuacacuaucaUAAUGCCCCUAAAAAUCCUUAUUGcucuugcagu
...((((((..((((((((..((((((((((((((((((.......)))).)))....))))))))))).))))))))..))))))...

Structure

acc      aa        AC           ----   -    uu 
   gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUGU  c
   ||||||  ||||||||  |||||||||||    ||| ||||  c
   cguucu  UUAUUCCU  AAAAUCCCCGU    cua caca  a
uga      cG        -A           AAUa   u    uu 

Annotation confidence Medium

Genome context

KB375532.1: 992939-993027 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-365-1

Mature cli-miR-365-5p

• Accession: MIMAT0038624
• Description: Columba livia cli-miR-365-5p mature miRNA
• Sequence: 16 - AGGGACUUUUGGGGGCAGAUGUGU - 39
• Evidence: experimental ; Illumina [1]

Mature cli-miR-365-3p

• Accession: MIMAT0038625
• Description: Columba livia cli-miR-365-3p mature miRNA
• Sequence: 56 - UAAUGCCCCUAAAAAUCCUUAUUG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196