miRBase entry: cli-mir-429

Stem-loop cli-mir-429

Accession

MI0030041

Description

Columba livia cli-mir-429 precursor miRNA

Sequence

aagugccugcugauugcuGUCUUACCAGGCAAAGUUAGAUcuagcuauuuuugucUAAUACUGUCUGGUAAUGCCGUcaaucgcaucggcaaaa
...(((((((.((((((.((.((((((((((..(((((((............)))))))..)))))))))).)).).))))))))..))))...

Structure

aag    --   u     - u  C          AA       cuagc 
   ugcc  ugc gauug c GU UUACCAGGCA  GUUAGAU     u
   ||||  ||| ||||| | || ||||||||||  |||||||      
   acgg  acg cuaac G CG AAUGGUCUGU  UAAUcug     a
aaa    cu   -     U C  U          CA       uuuuu

Annotation confidence Not enough data

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Genome context

KB376210.1: 2382074-2382167 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-429

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-429-5p

Accession	MIMAT0038634
Description	Columba livia cli-miR-429-5p mature miRNA
Sequence	19 - GUCUUACCAGGCAAAGUUAGAU - 40
Evidence	experimental Illumina [1]

Mature cli-miR-429-3p

Accession	MIMAT0038635
Description	Columba livia cli-miR-429-3p mature miRNA
Sequence	56 - UAAUACUGUCUGGUAAUGCCGU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196