Stem-loop cli-mir-449c

Accession

MI0030044

Description

Columba livia cli-mir-449c precursor miRNA

Sequence

agaauguaacagucUGGCAGUGCAUGUUAGCUGGCUGUUgugucugaugugucaaCAGCUGCUAGCUGUGCUCCACauuguuucauucaaa
.(((((.((((((.(((.((((((.((((((.((((((((...(....)...))))))))))))))))))))))).)))))).)))))...

Structure

--a     u      c   C      U      U        ugu u 
   gaaug aacagu UGG AGUGCA GUUAGC GGCUGUUg   c g
   ||||| |||||| ||| |||||| |||||| ||||||||   |  
   cuuac uuguua ACC UCGUGU CGAUCG UCGACaac   g a
aaa     u      C   -      -      -        ugu u 

Annotation confidence Not enough data

Genome context

KB375359.1: 2804268-2804358 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cli-mir-449c

Mature cli-miR-449c-5p

• Accession: MIMAT0038639
• Description: Columba livia cli-miR-449c-5p mature miRNA
• Sequence: 15 - UGGCAGUGCAUGUUAGCUGGCUGUU - 39
• Evidence: experimental ; Illumina [1]

Mature cli-miR-449c-3p

• Accession: MIMAT0038640
• Description: Columba livia cli-miR-449c-3p mature miRNA
• Sequence: 56 - CAGCUGCUAGCUGUGCUCCAC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196