Stem-loop cli-mir-458

Accession

MI0030050

Description

Columba livia cli-mir-458 precursor miRNA

Sequence

15730 reads, 118.0 reads per million, 27 experiments

cguggugcagauggcAGCGCCAUUUCCAGAGCUAUAaacagucucauugucAUAGCUCUUUGAAUGGUACUGCcauauguaccgga
..(((((((.(((((((.(((((((..((((((((..(((((...))))).))))))))..))))))).))))))).)))))))..

Structure

cg       g       C       CC        Aa     c 
  uggugca auggcAG GCCAUUU  AGAGCUAU  acagu  
  ||||||| ||||||| |||||||  ||||||||  ||||| u
  gccaugu uacCGUC UGGUAAG  UCUCGAUA  uguua  
ag       a       A       UU        -c     c 

Annotation confidence High

Genome context

13: 17950120-17950205 [+]

Mature cli-miR-458-5p

• Accession: MIMAT0038649
• Description: Columba livia cli-miR-458-5p mature miRNA
• Sequence: 16 - AGCGCCAUUUCCAGAGCUAUA - 36
• Evidence: experimental ; Illumina [1]

Mature cli-miR-458-3p

• Accession: MIMAT0038650
• Description: Columba livia cli-miR-458-3p mature miRNA
• Sequence: 52 - AUAGCUCUUUGAAUGGUACUGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196