Stem-loop cli-mir-460b

Accession

MI0030053

Description

Columba livia cli-mir-460b precursor miRNA

Sequence

3996 reads, 21.0 reads per million, 23 experiments

cucuggcucuauagugUCCUCAUUGUACAUGCUGUGUGUauuugucacguacACAGCGCAUGCAAUGUGGACAUaauggagcucaauu
....((((((((.((((((.(((((..(((((..(((((((.......)))))))..)))))))))).)))))).)))))))).....

Structure

-cucu        a      U     UA     UG       uu 
     ggcucuau gugUCC CAUUG  CAUGC  UGUGUau  g
     |||||||| |||||| |||||  |||||  |||||||  u
     ucgaggua UACAGG GUAAC  GUACG  ACAcaug  c
uuaac        a      U     --     CG       ca 

Annotation confidence High

Genome context

4A: 12209221-12209308 [+]

Mature cli-miR-460b-5p

• Accession: MIMAT0038654
• Description: Columba livia cli-miR-460b-5p mature miRNA
• Sequence: 17 - UCCUCAUUGUACAUGCUGUGUGU - 39
• Evidence: experimental ; Illumina [1]

Mature cli-miR-460b-3p

• Accession: MIMAT0038655
• Description: Columba livia cli-miR-460b-3p mature miRNA
• Sequence: 53 - ACAGCGCAUGCAAUGUGGACAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196