Stem-loop cli-mir-875

Accession

MI0030061

Description

Columba livia cli-mir-875 precursor miRNA

Sequence

2218 reads, 14.0 reads per million, 20 experiments

uuagugguacAAUACCUCAGUCUUUUCGGAUGUucuauaaauucaCCUGGAAAUACUGAGGUUGCGUUucacugaac
(((((((.((...((((((((.(((((((.((...........)).))))))).))))))))...)).)))))))..

Structure

--       u  AAU        C       A  Uucu 
  uuagugg ac   ACCUCAGU UUUUCGG UG    a
  ||||||| ||   |||||||| ||||||| ||    u
  agucacu UG   UGGAGUCA AAAGGUC ac    a
ca       U  CGU        U       C  uuaa 

Annotation confidence High

Genome context

2: 114273753-114273829 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-875

Mature cli-miR-875-5p

• Accession: MIMAT0038668
• Description: Columba livia cli-miR-875-5p mature miRNA
• Sequence: 11 - AAUACCUCAGUCUUUUCGGAUGU - 33
• Evidence: experimental ; Illumina [1]

Mature cli-miR-875-3p

• Accession: MIMAT0038669
• Description: Columba livia cli-miR-875-3p mature miRNA
• Sequence: 46 - CCUGGAAAUACUGAGGUUGCGUU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196